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Services

Bioinformatics Services

Do you have questions about running a computational process for genomics data? Is the process new to you, or are your systems unable to process a job of this scale? We are available to help. Computational genomics assistance is available to all faculty, staff, and students at UTIA. The service is offered by Ryan Kuster at [email protected].

Data Analysis Support

Past services have included these topics:

  • Genome or Transcriptome Assembly
  • Gene Annotation
  • Differential Expression Analysis
  • Variant Calling (SNPs, InDels, SVs)
  • Generating SSR Markers
  • Small RNA Analysis
  • How to Order Sequencing (Platform, Depth, Price, etc.)

*If what you need isn’t on the list, we are still happy to meet with you and talk through possible support options.

Training

  • Software Installation on Linux
  • Using ISAAC HPC
  • R and Python Scripting
  • Running containers with Singularity
  • Data management and version control with Git/GitHub
  • Workflow Development with Nextflow

Fees

The first meeting is free of charge and will be used to develop a plan of action catered to your areas of need. The hourly fee for general research assistance and analysis is $80/hour (please contact us for external pricing).

Contact us

To learn about what resources are available for your research, please contact us at [email protected] with a brief description of your research needs.